Titles only.

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1967 The conjectures of Birch and Swinnerton-Dyer for constant abelian varieties over function fields (thesis)
1968a Extensions of abelian varieties defined over a finite field. Invent. Math. 5 (1968), 63-84.
1968b The Tate-\v Safarevi\v c group of a constant abelian variety, Invent. Math. 6 (1968), 91-105.
1970a The homological dimension of commutative group schemes over a perfect field. J. of Algebra 16 (1970), 436--441.
1970b Elements of order p in the Tate-\v Safarevi\v c group, Bull. London Math. Soc. 2 (1970), 293-296.
1970c Weil-Châtelet groups over local fields, Ann. Sci. Ecole Norm. Sup. 4 series, T3 (1970), 273-284; Addendum T5 (1972), 261-264.
1970d The Brauer group of a rational surface, Invent. Math. 11 (1970), 304-307.
1971a Abelian varieties over finite fields (with W. C. Waterhouse), Proc. Symp. Pure Math. 20 (1971), 53-64.
1972a On the arithmetic of abelian varieties, Invent. Math. 17 (1972), 177-190.
1972b Congruence subgroups of abelian varieties, Bull. Sci. Math. 96 (1972), 333-338.
1973a On a theorem of Mazur and Roberts, Amer. J. Math. 95 (1973), 80-86.
1975a On a conjecture of Artin and Tate, Annals of Math. 102 (1975), 517-533.
1976a Duality in the flat cohomology of surfaces, Ann. Sci. Ecole Norm. Sup. 9 (1976), 171-202.
1976b Flat homology, Bull. Amer. Math. Soc. 82 (1976), 118-120.
1976c Duality in the flat cohomology of curves (with M. Artin), Invent. Math. 35 (1976), 111-129 (Serre volume).
1979a Points on Shimura varieties mod p, Proc. Symp. Pure Math. 33 (1979), part 2, 165-184.
1979b Etude d'une class d'isogénie. In Variétiés de Shimura et Fonctions L, Publications Mathématiques de l'Université Paris 7 (1979), 73-81.
1979c Shimura varieties: conjugates and the action of complex multiplication, 154pp, October 1979 (with K-y. Shih).
1980 Etale Cohomology, Princeton Mathematical Series 33, Princeton UP, 323+xiii pages (see Books).
1981a The action of complex conjugation on a Shimura variety (with K-y. Shih), Annals of Math. 113 (1981), 569-599.
1981b Automorphism groups of Shimura varieties and reciprocity laws (with K-y. Shih), Amer. J. Math. 103 (1981), 1159-1175.
1981c Some estimates from étale cohomology, J. Reine Angew. Math. 328 (1981), 208-220.
1981d Abelian Varieties with Complex Multiplication (for Pedestrians) Handwritten notes (19.09.81), widely distributed.
1982 Hodge Cycles, Motives, and Shimura Varieties (with Pierre Deligne, Arthur Ogus, Kuang-yen Shih), Lecture Notes in Math. 900, Springer-Verlag, 414 pages (see Books).
1982a Hodge cycles on abelian varieties (notes of a seminar of P. Deligne), in Hodge Cycles, Motives, and Shimura Varieties, LNM 900, Springer, 9-100.
1982c Langlands's construction of the Taniyama group (with K-y. Shih), in Hodge Cycles, Motives, and Shimura Varieties, LNM 900, Springer, 229-260.
1982d Conjugates of Shimura varieties (with K-y. Shih)
1982e Zero cycles on algebraic varieties in nonzero characteristic: Rojtman's theorem, Compositio Math. 47 (1982), 271-287.
1982f Comparison of the Brauer group with the Tate-\v Safarevi\v c group, J. Fac. Sci. Univ. Tokyo (Shintani Memorial Volume) IA 28 (1982), 735-743.
1983a The action of an automorphism of C on a Shimura variety and its special points
1984 Kazhdan's Theorem on Arithmetic Varieties. Handwritten notes, 42 pages, 28.03.84.
1986a Values of zeta functions of varieties over finite fields, Amer. J. Math. 108, (1986), 297-360.
1986b Abelian varieties, in Arithmetic Geometry (Proc. Conference on Arithmetic Geometry, Storrs, August 1984) Springer, 1986, 103-150.
1986c Jacobian varieties, in Arithmetic Geometry (Proc. Conference on Arithmetic Geometry, Storrs, August 1984) Springer, 1986, 167-212.
1987 The (failure of the) Hasse principle for centres of semisimple groups, manuscript.
Proves that the Hasse principle holds for the centres of some semisimple groups over number fields, and fails for others.
1988a Automorphic vector bundles on connected Shimura varieties, Inventiones math., 92 (1988), 91-128.
1988b Motivic cohomology and values of zeta functions, Compos. math. 68 (1988), 59-102.
1990 Automorphic Forms, Shimura Varieties, and L-functions, Proceedings of a Conference held at the University of Michigan, Ann Arbor, July 6--16, 1988. (Editor with L. Clozel). See Books.
1990a Canonical Models of (Mixed) Shimura Varieties and Automorphic Vector Bundles. In: Automorphic Forms, Shimura Varieties, and L-functions, (Proceedings of a Conference held at the University of Michigan, Ann Arbor, July 6-16, 1988), pp283--414.
1990b Letter to Deligne 28.03.90
1992a The points on a Shimura variety modulo a prime of good reduction. In: The Zeta Function of Picard Modular Surfaces, Publ. Centre de Rech. Math., Montreal (Eds. R. Langlands and D. Ramakrishnan), 1992, pp151--253.
1994a Motives over finite fields. In: Motives (Eds. Jannsen, Kleiman, Serre), AMS, Proc. Symp Pure Math. 55, 1994, Part 1, pp. 401--459.
1994b Shimura varieties and motives, In: Motives (Eds. U. Jannsen, S. Kleiman, J.-P. Serre), Proc. Symp. Pure Math., AMS, 55, 1994, Part 2, pp447--523.
1995a Talks at IAS on Shimura varieties
1995b Shimura Variety. Encyclopedia of Mathematics, Supplement Vol I, Kluwer Acad, Publ., 1997, pp448-449.
1995c On the conjecture of Langlands and Rapoport arXiv:0707.3173
1999a Lefschetz Classes on Abelian Varieties Duke Math. J. 96:3, 1999, pp. 639-675.
1999b Lefschetz Motives and the Tate Conjecture Compositio Math. 117 (1999), pp. 47-81.
1999c Descent for Shimura Varieties, Michigan Math. J., 46 (1999), pp. 203--208; arXiv:alg-geom/9712031.
2000 Towards a proof of the conjecture of Langlands and Rapoport. Text for a talk April 28, 2000, IHP, Paris.
2001a The Tate conjecture for certain abelian varieties over finite fields. Acta Arith. 100 (2001), no. 2, pp.135--166; arXiv:math/9911218
2002a Polarizations and Grothendieck's Standard Conjectures, Ann. of Math. 155 (2002), pp. 599--610; arXiv:math/0103175.
2002b MR review of: Harris and Taylor, The Geometry and Cohomology of Some Simple Shimura Varieties, Annals of Math. Studies, Princeton UP, 2001.
2003a Canonical models of Shimura curves, Preliminary draft (04.04.03), 40 pages.
2003b Gerbes and abelian motives arXiv.math/0301304.
2004a Integral Motives and Special Values of Zeta Functions (with N. Ramachandran), J. Amer. Math. Soc. 17 (2004), 499-555; arXiv:math/0204065.
2004b MR review of Shimura, Collected Papers
2004c Periods of abelian varieties, Compositio Math. 140 (2004), 1149--1175; arXiv:math/0209076.
2005a Introduction to Shimura varieties, In Harmonic Analysis, the Trace Formula and Shimura Varieties (James Arthur, Robert Kottwitz, Editors) AMS, 2005, (Lectures at the Summer School held at the Fields Institute, June 2 -- June 27, 2003).
2005b Quotients of Tannakian Categories arXiv:math/0508479 (11 pages).
2005c The de Rham-Witt and Z_p-cohomologies of an algebraic variety (with Niranjan Ramachandran), Advances in Mathematics (Artin volume), 198 (2005), 36--42.
2006a Motives over F_p, arXiv:math/0607569.
2006 Motivic complexes over finite fields and the ring of correspondences at the generic point (with Niranjan Ramachandran) arXiv.math/0607483.
2007a Semisimple Lie algebras, algebraic groups, and tensor categories, (09.05.07, 37 pages).
2007b Semisimple algebraic groups in characteristic zero, arXiv:0705.1348.
2007c The fundamental theorem of complex multiplication, arXiv:0705.3446.
2007d Rational Tate classes on abelian varieties, arXive:0707.3167.
2007e The Tate conjecture over finite fields (AIM talk), 19.09.07 19 pages